PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400028388
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family AP2
Protein Properties Length: 513aa    MW: 56403.8 Da    PI: 7.474
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400028388genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP236.61.1e-11104160155
                   AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                           s y+GV++++++gr++A+++d  +     ++ k  + g ++ +e+Aa+a++ a++k++g
  PGSC0003DMP400028388 104 SIYRGVTRHRWTGRYEAHLWDnSCR-RegQTrKGRQ-GGYDKEEKAARAYDLAALKYWG 160
                           57*******************4444.2455535555.779999**************98 PP

2AP243.11e-13203254155
                   AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                           s y+GV+++++ grW A+I  +     +k  +lg+f t eeAa a++ a+ k++g
  PGSC0003DMP400028388 203 SIYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAGAYDIAAIKFRG 254
                           57****************988532...5************************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008473.4E-9104160IPR001471AP2/ERF domain
SuperFamilySSF541714.05E-15104170IPR016177DNA-binding domain
CDDcd000182.12E-19104170No hitNo description
PROSITE profilePS5103217.385105168IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.4E-12105169IPR001471AP2/ERF domain
SMARTSM003806.4E-23105174IPR001471AP2/ERF domain
PRINTSPR003674.2E-6106117IPR001471AP2/ERF domain
SuperFamilySSF541712.16E-17203263IPR016177DNA-binding domain
CDDcd000182.67E-24203264No hitNo description
PfamPF008476.3E-9203254IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.3E-17204262IPR001471AP2/ERF domain
PROSITE profilePS5103218.795204262IPR001471AP2/ERF domain
SMARTSM003802.0E-32204268IPR001471AP2/ERF domain
PRINTSPR003674.2E-6244264IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 513 aa     Download sequence    Send to blast
MIKNWLRNNP NSTTTTTTTP SLLQDDKKEG DVVGVAGGGS SGTNAQSLSL SMSTGGDGGG  60
ENSCSSENKQ EIVNGNNGST IDGQISGAIV APKKSIDTFG QRTSIYRGVT RHRWTGRYEA  120
HLWDNSCRRE GQTRKGRQGG YDKEEKAARA YDLAALKYWG PTTTTNFPIS NYEKELEEMK  180
NMTRQEYVAS LRRKSSGFSR GASIYRGVTR HHQHGRWQAR IGRVAGNKDL YLGTFSTQEE  240
AAGAYDIAAI KFRGLNAVTN FEINRYDVKS ILESSTLPIG GAAKRLKDVE QAEIALNYQR  300
ASQENIGTTH LMNGSMSTYG AGHCWPNITL QQAQPLSAMH YNNPYNSQQR LWCKQEVQDH  360
DLTSQNFQDF QLGNAHNYLM GLDNSSSSSM EQNNVTYHQG VGYASNNNNH HGGGGFVLPQ  420
LNGSSYGGEN DNEVKQLQLG THENIFGNYY HSQPTTSNDS VKVSNTLYDH QESACNNNNW  480
MSTDVPMALA SRTSTMAVCH SAAPTFTMWN DS*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755230.0HG975523.1 Solanum lycopersicum chromosome ch11, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006353288.10.0PREDICTED: AP2-like ethylene-responsive transcription factor AIL1
SwissprotQ5YGP71e-135PLET2_ARATH; AP2-like ethylene-responsive transcription factor PLT2
TrEMBLM1BC690.0M1BC69_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000418810.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA70992131
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G51190.11e-136AP2 family protein
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]